Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs142726939 chr13:45042134 ACG/A 1.74E-11 284 26.18 23.1 6.17 KM Plot
KIRP rs142766897 chr6:27619691 C/CA 1.21E-8 288 25.58 29.2 9.77 KM Plot
KIRP rs142808087 chr6:28326294 GCAGAACCCA/G 1.9E-8 285 25.57 26.4 9.77 KM Plot
KIRP rs142831358 chr3:16506124 GCA/G 9.51E-5 289 25.62 45.47 9.35 KM Plot
KIRP rs142838593 chr19:23635009 G/GTATA 2.31E-5 288 27.47 24.73 20.8 KM Plot
KIRP rs142965311 chr6:27989252 C/T 2.01E-8 288 25.62 26.4 9.77 KM Plot
KIRP rs143035720 chr2:47151016 C/T 2.63E-7 287 25.37 34.43 10.97 KM Plot
KIRP rs143252850 chr21:44263682 GGC/G 0.000171 286 25.53 43.53 13.07 KM Plot
KIRP rs143349174 chr6:148679033 T/C 5.5E-6 285 26.4 19.63 17.13 KM Plot
KIRP rs143618681 chr6:28293408 G/GC 1.54E-8 288 25.6 27.78 9.77 KM Plot
KIRP rs143798139 chr16:90026005 C/A 1.97E-8 282 24.73 34.82 5.95 KM Plot
KIRP rs143928170 chr16:8715388 G/GCCACCCATATGCGGAGATGACC 5.59E-5 286 5.72 32.93 25.58 KM Plot
KIRP rs1443120 chr11:110244228 C/G 0.000119 289 17.13 21.28 26.37 KM Plot
KIRP rs144332481 chr19:8474372 G/A 3.58E-5 277 25.37 32.93 11.43 KM Plot
KIRP rs144385364 chr11:102725323 TA/T 8.11E-6 288 25.7 26.52 10.97 KM Plot